3NGN	Hydrolase	date	Jun 12, 2010
title	Crystal Structure Of The Human Cnot6l Nuclease Domain In Com Amp
authors	H.Wang, M.Morita, W.Yang, M.Bartlam, T.Yamamoto, Z.Rao
compound		source
Molecule: Ccr4-Not Transcription Complex Subunit 6-Like Chain: A Fragment: Nuclease Domain (Unp Residues 158-555) Synonym: Cnot6l, Carbon Catabolite Repressor Protein 4 Homo Ec: 3.1.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cnot6l, Ccr4b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: P 32 2 1	R_factor 0.210 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.955 76.955 165.654 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	AMP	enzyme	Hydrolase E.C.3.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the human CNOT6L nuclease domain reveals strict poly(A) substrate specificity., Wang H, Morita M, Yang X, Suzuki T, Yang W, Wang J, Ito K, Wang Q, Zhao C, Bartlam M, Yamamoto T, Rao Z, EMBO J. 2010 Jul 13. PMID:20628353

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (3ngn.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 3NGN CSU: Contacts of Structural Units for 3NGN Structure Factors (360 Kb) Retrieve 3NGN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NGN from S2C, [Save to disk] Re-refined 3ngn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3NGN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NGN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ngn] [3ngn_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3NGN

Community annotation for 3NGN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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