3NI0 Immune System date Jun 14, 2010
title Crystal Structure Of Mouse Bst-2tetherin Ectodomain
authors S.M.Scheaffer, T.J.Brett
compound source
Molecule: Bone Marrow Stromal Antigen 2
Chain: A, B
Fragment: Unp Residues 53-151
Synonym: Bst-2, Hm1.24 Antigen, Cd317
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Bst2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23b
symmetry Space Group: I 21 21 21
R_factor 0.214 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.685 100.831 110.432 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand IPA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and biophysical analysis of BST-2/tetherin ectodomains reveal an evolutionary conserved design to inhibit virus release., Swiecki M, Scheaffer SM, Allaire M, Fremont DH, Colonna M, Brett TJ, J Biol Chem. 2010 Nov 17. PMID:21084286
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3ni0.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3NI0
  • CSU: Contacts of Structural Units for 3NI0
  • Structure Factors (347 Kb)
  • Retrieve 3NI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NI0 from S2C, [Save to disk]
  • Re-refined 3ni0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NI0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NI0, from MSDmotif at EBI
  • Fold representative 3ni0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ni0_B] [3ni0] [3ni0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NI0
  • Community annotation for 3NI0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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