3NMR Rna Binding Protein Rna date Jun 22, 2010
title Crystal Structure Of Cugbp1 Rrm12-Rna Complex
authors M.Teplova, J.Song, H.Gaw, A.Teplov, D.J.Patel
compound source
Molecule: Cugbp Elav-Like Family Member 1
Chain: A
Fragment: Rrm1-Rrm2 Domain (Unp Residues 14-187)
Synonym: Celf-1, Cug-Bp- And Etr-3-Like Factor 1, Bruno-Lik 2, Rna-Binding Protein Brunol-2, Cug Triplet Repeat Rna-Bin Protein 1, Cug-Bp1, Deadenylation Factor Cug-Bp, 50 Kda Nuc Polyadenylated Rna-Binding Protein, Embryo Deadenylation El Binding Protein Homolog, Eden-Bp Homolog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brunol2, Celf1, Cugbp, Cugbp1, Nab50
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril

Molecule: Rna (5'-R(Gpupupgpupupupupgpupupu)-3'
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: I 2 2 2
R_factor 0.204 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.548 70.012 132.209 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand MSE enzyme
note 3NMR is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into RNA recognition by the alternate-splicing regulator CUG-binding protein 1., Teplova M, Song J, Gaw HY, Teplov A, Patel DJ, Structure. 2010 Oct 13;18(10):1364-77. PMID:20947024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3nmr.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3NMR
  • CSU: Contacts of Structural Units for 3NMR
  • Structure Factors (366 Kb)
  • Retrieve 3NMR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NMR from S2C, [Save to disk]
  • Re-refined 3nmr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NMR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NMR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NMR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nmr_A] [3nmr] [3nmr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NMR: [RRM ] by SMART
  • Other resources with information on 3NMR
  • Community annotation for 3NMR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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