3NMW	Cell Adhesion Cell Cycle	date	Jun 22, 2010
title	Crytal Structure Of Armadillo Repeats Domain Of Apc
authors	Z.Zhang, L.Chen, L.Gao, K.Lin, G.Wu
compound		source
Molecule: Apc Variant Protein Chain: A, B Fragment: Armadiilo Repeats Domain Synonym: Adenomatous Polyposis Coli Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apc Variant Protein Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1	R_factor 0.168 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.389 52.682 63.451 90.31 89.95 95.16
method	X-Ray Diffraction	resolution	1.60 Å
ligand	MSE, SO4	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk] Biological Unit Coordinates (3nmw.pdb1.gz) 106 Kb Biological Unit Coordinates (3nmw.pdb2.gz) 118 Kb LPC: Ligand-Protein Contacts for 3NMW CSU: Contacts of Structural Units for 3NMW Structure Factors (1238 Kb) Retrieve 3NMW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NMW from S2C, [Save to disk] Re-refined 3nmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NMW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3NMW

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3NMW, from MSDmotif at EBI Fold representative 3nmw from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3nmw_A] [3nmw_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3NMW with the sequences similar proteins can be viewed for 3NMW's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3NMW

Community annotation for 3NMW at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

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