3NMW Cell Adhesion Cell Cycle date Jun 22, 2010
title Crystal Structure Of Armadillo Repeats Domain Of Apc
authors Z.Zhang, L.Chen, L.Gao, K.Lin, G.Wu
compound source
Molecule: Apc Variant Protein
Chain: A, B
Fragment: Armadiilo Repeats Domain
Synonym: Adenomatous Polyposis Coli
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apc Variant Protein
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1
R_factor 0.168 R_Free 0.201
length a length b length c angle alpha angle beta angle gamma
51.389 52.682 63.451 90.31 89.95 95.16
method X-Ray Diffractionresolution 1.60 Å
ligand MSE, SO4 enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (3nmw.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (3nmw.pdb2.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3NMW
  • CSU: Contacts of Structural Units for 3NMW
  • Structure Factors (1198 Kb)
  • Retrieve 3NMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NMW from S2C, [Save to disk]
  • Re-refined 3nmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NMW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NMW, from MSDmotif at EBI
  • Fold representative 3nmw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nmw] [3nmw_B] [3nmw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NMW: [ARM ] by SMART
  • Other resources with information on 3NMW
  • Community annotation for 3NMW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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