3NMX Cell Adhesion Cell Cycle date Jun 22, 2010
title Crystal Structure Of Apc Complexed With Asef
authors Z.Zhang, L.Chen, L.Gao, K.Lin, G.Wu
compound source
Molecule: Apc Variant Protein
Chain: A, B, C
Fragment: Armadiilo Repeats Domain
Synonym: Adenomatous Polyposis Coli
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Rho Guanine Nucleotide Exchange Factor 4
Chain: D, E, F
Fragment: Unp Residues 170-194
Synonym: Apc-Stimulated Guanine Nucleotide Exchange Factor,
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: C 1 2 1
R_factor 0.208 R_Free 0.254
length a length b length c angle alpha angle beta angle gamma
147.790 92.180 107.840 90.00 93.77 90.00
method X-Ray Diffractionresolution 2.30 Å
A, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (3nmx.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3nmx.pdb2.gz) 114 Kb
  • Biological Unit Coordinates (3nmx.pdb3.gz) 114 Kb
  • CSU: Contacts of Structural Units for 3NMX
  • Structure Factors (908 Kb)
  • Retrieve 3NMX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NMX from S2C, [Save to disk]
  • Re-refined 3nmx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NMX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NMX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NMX, from MSDmotif at EBI
  • Fold representative 3nmx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nmx_D] [3nmx_B] [3nmx_F] [3nmx_E] [3nmx_C] [3nmx_A] [3nmx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NMX: [ARM ] by SMART
  • Other resources with information on 3NMX
  • Community annotation for 3NMX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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