3NMX Cell Adhesion Cell Cycle date Jun 22, 2010
title Crystal Structure Of Apc Complexed With Asef
authors Z.Zhang, L.Chen, L.Gao, K.Lin, G.Wu
compound source
Molecule: Apc Variant Protein
Chain: A, B, C
Fragment: Armadiilo Repeats Domain
Synonym: Adenomatous Polyposis Coli
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Rho Guanine Nucleotide Exchange Factor 4
Chain: D, E, F
Fragment: Unp Residues 170-194
Synonym: Apc-Stimulated Guanine Nucleotide Exchange Factor,
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: C 1 2 1
R_factor 0.208 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.790 92.180 107.840 90.00 93.77 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (3nmx.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3nmx.pdb2.gz) 114 Kb
  • Biological Unit Coordinates (3nmx.pdb3.gz) 114 Kb
  • CSU: Contacts of Structural Units for 3NMX
  • Structure Factors (908 Kb)
  • Retrieve 3NMX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NMX from S2C, [Save to disk]
  • Re-refined 3nmx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NMX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NMX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NMX, from MSDmotif at EBI
  • Fold representative 3nmx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nmx_D] [3nmx_B] [3nmx_F] [3nmx_E] [3nmx_C] [3nmx_A] [3nmx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3NMX with the sequences similar proteins can be viewed for 3NMX's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3NMX
  • Community annotation for 3NMX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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