3NO8 Isomerase Regulator date Jun 24, 2010
title Crystal Structure Of The Phr Domain From Human Btbd2 Protein
authors P.Sampathkumar, S.Miller, M.Rutter, K.Bain, T.Gheyi, S.Atwell, D.A.Thompson, J.S.Emtage, S.Wasserman, J.M.Sauder, S.K.Burley, N Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Btbpoz Domain-Containing Protein 2
Chain: A, B
Fragment: Phr Domain Residues 361-525
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btbd, Btbd2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Bc-Psgx3(Bc); Modified Pet26b
symmetry Space Group: P 43 21 2
R_factor 0.199 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
59.513 59.513 175.919 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, SO4 enzyme
note 3NO8 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3no8.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3no8.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3NO8
  • CSU: Contacts of Structural Units for 3NO8
  • Structure Factors (247 Kb)
  • Retrieve 3NO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NO8 from S2C, [Save to disk]
  • Re-refined 3no8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NO8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NO8, from MSDmotif at EBI
  • Fold representative 3no8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3no8_A] [3no8] [3no8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NO8
  • Community annotation for 3NO8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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