3NPC Transferase Transferase Inhibitor date Jun 28, 2010
title Crystal Structure Of Jnk2 Complexed With Birb796
authors A.Kuglstatter, M.Ghate
compound source
Molecule: Mitogen-Activated Protein Kinase 9
Chain: A, B
Fragment: Unp Residues 1-364
Synonym: Map Kinase 9, Mapk 9, Stress-Activated Protein Kin C-Jun N-Terminal Kinase 2, Jnk-55;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk9, Jnk2, Prkm9
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.254
length a length b length c angle alpha angle beta angle gamma
76.170 92.339 112.109 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand B96 BindingDB enzyme Transferase E.C. BRENDA
A, B

Primary referenceX-ray crystal structure of JNK2 complexed with the p38alpha inhibitor BIRB796: Insights into the rational design of DFG-out binding MAP kinase inhibitors., Kuglstatter A, Ghate M, Tsing S, Villasenor AG, Shaw D, Barnett JW, Browner MF, Bioorg Med Chem Lett. 2010 Jul 22. PMID:20655210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (3npc.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (3npc.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (3npc.pdb3.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 3NPC
  • CSU: Contacts of Structural Units for 3NPC
  • Structure Factors (264 Kb)
  • Retrieve 3NPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NPC from S2C, [Save to disk]
  • Re-refined 3npc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NPC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NPC, from MSDmotif at EBI
  • Fold representative 3npc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3npc_A] [3npc_B] [3npc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NPC: [S_TKc ] by SMART
  • Other resources with information on 3NPC
  • Community annotation for 3NPC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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