3NPD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CXS, EDO, MSE, SO4 enzyme
note 3NPD is a representative structure
Primary referenceCrystal structure of a putative quorum sensing-regulated protein (PA3611) from the Pseudomonas-specific DUF4146 family., Das D, Chiu HJ, Farr CL, Grant JC, Jaroszewski L, Knuth MW, Miller MD, Tien HJ, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2014 Jun;82(6):1086-92. doi: 10.1002/prot.24455. Epub 2013 Nov 22. PMID:24174223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3npd.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3NPD
  • CSU: Contacts of Structural Units for 3NPD
  • Structure Factors (1943 Kb)
  • Retrieve 3NPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NPD from S2C, [Save to disk]
  • Re-refined 3npd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3npd] [3npd_A]
  • SWISS-PROT database:

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