3NWH Antiviral Protein date Jul 09, 2010
title Crystal Structure Of Bst2tetherin
authors H.L.Schubert, Q.Zhai, C.P.Hill
compound source
Molecule: Bone Marrow Stromal Antigen 2
Chain: A, B, C, D
Fragment: Extracellular Domain (Unp Residues 47-152)
Synonym: Bst-2, Tetherin, Hm1.24 Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bst2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptopo
symmetry Space Group: P 1 21 1
R_factor 0.260 R_Free 0.288
length a length b length c angle alpha angle beta angle gamma
26.550 59.584 159.473 90.00 91.56 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MSE enzyme
note 3NWH supersedes 3MKX
A, D, C, B

Primary referenceStructural and functional studies on the extracellular domain of BST2/tetherin in reduced and oxidized conformations., Schubert HL, Zhai Q, Sandrin V, Eckert DM, Garcia-Maya M, Saul L, Sundquist WI, Steiner RA, Hill CP, Proc Natl Acad Sci U S A. 2010 Sep 29. PMID:20880831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (3nwh.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 3NWH
  • CSU: Contacts of Structural Units for 3NWH
  • Structure Factors (747 Kb)
  • Retrieve 3NWH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NWH from S2C, [Save to disk]
  • Re-refined 3nwh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NWH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NWH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NWH, from MSDmotif at EBI
  • Fold representative 3nwh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nwh] [3nwh_D] [3nwh_B] [3nwh_A] [3nwh_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NWH
  • Community annotation for 3NWH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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