3NXS Transport Protein date Jul 14, 2010
title Crystal Structure Of Laoao Transport System From Mycobacter Smegmatis Bound To Gdp
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Laoao Transport System Atpase
Chain: A
Ec: 2.7.-.-
Engineered: Yes
Organism_scientific: Mycobacterium Smegmatis
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155
Gene: Msmeg_3160
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Ava0421
symmetry Space Group: P 21 21 2
R_factor 0.209 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.630 91.460 57.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, GDP enzyme Transferase E.C.2.7 BRENDA
Gene MSMEG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of Mycobacterial MeaB and MMAA-like GTPases., Edwards TE, Baugh L, Bullen J, Baydo RO, Witte P, Thompkins K, Phan IQ, Abendroth J, Clifton MC, Sankaran B, Van Voorhis WC, Myler PJ, Staker BL, Grundner C, Lorimer DD, J Struct Funct Genomics. 2015 Jun;16(2):91-9. doi: 10.1007/s10969-015-9197-2., Epub 2015 Apr 2. PMID:25832174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3nxs.pdb1.gz) 190 Kb
  • LPC: Ligand-Protein Contacts for 3NXS
  • CSU: Contacts of Structural Units for 3NXS
  • Structure Factors (269 Kb)
  • Retrieve 3NXS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NXS from S2C, [Save to disk]
  • Re-refined 3nxs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NXS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NXS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NXS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nxs_A] [3nxs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NXS: [AAA ] by SMART
  • Other resources with information on 3NXS
  • Community annotation for 3NXS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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