3NY5	Transferase	date	Jul 14, 2010
title	Crystal Structure Of The Rbd Domain Of Serinethreonine-Prot B-Raf From Homo Sapiens. Northeast Structural Genomics Cons Target Hr4694f
authors	S.Vorobiev, M.Su, J.Seetharaman, P.Patel, R.Xiao, C.Ciccosanti, R. J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt Northeast Structural Genomics Consortium (Nesg)
compound		source
Molecule: Serinethreonine-Protein Kinase B-Raf Chain: A, B, C, D Fragment: Rbd Domain Residues 153-237 Synonym: Proto-Oncogene B-Raf, P94, V-Raf Murine Sarcoma Vi Oncogene Homolog B1; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)+ Magic Expression_system_vector: Pet 14-15c
symmetry	Space Group: P 21 21 21	R_factor 0.210 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.805 69.418 114.607 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	MSE	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (3ny5.pdb1.gz) 58 Kb Biological Unit Coordinates (3ny5.pdb2.gz) 56 Kb Biological Unit Coordinates (3ny5.pdb3.gz) 56 Kb LPC: Ligand-Protein Contacts for 3NY5 CSU: Contacts of Structural Units for 3NY5 Structure Factors (1024 Kb) Retrieve 3NY5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NY5 from S2C, [Save to disk] Re-refined 3ny5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NY5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3NY5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NY5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ny5_B] [3ny5_C] [3ny5_A] [3ny5_D] [3ny5] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3NY5: [RBD ] by SMART

Other resources with information on 3NY5

Community annotation for 3NY5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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