3NY5 Crystal structure of the RBD domain of serine/threonine-protein kinase B-raf from Homo sapiens. Northeast Structural Genomics Consortium Target HR4694F date
authors Vorobiev, S., Su, M., Seetharaman, J., Patel, P., Xiao, R., Ciccosanti, C., Shastry, R., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., NESG, Northeast.Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.99
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3ny5.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3ny5.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (3ny5.pdb3.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3NY5
  • CSU: Contacts of Structural Units for 3NY5
  • Structure Factors (1024 Kb)
  • Retrieve 3NY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NY5 from S2C, [Save to disk]
  • Re-refined 3ny5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NY5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NY5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ny5_B] [3ny5_C] [3ny5_A] [3ny5_D] [3ny5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NY5: [RBD ] by SMART
    • Other resources with information on 3NY5
  • Community annotation for 3NY5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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