3NYX Transferase Transferase Inhibitor date Jul 15, 2010
title Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazol Thiophene Inhibitor
authors C.Eigenbrot, M.Ultsch
compound source
Molecule: Non-Receptor Tyrosine-Protein Kinase Tyk2
Chain: A
Fragment: Kinase Domain Jh1
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyk2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.318 70.436 86.488 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DTT, TZ1 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA new regulatory switch in a JAK protein kinase., Tsui V, Gibbons P, Ultsch M, Mortara K, Chang C, Blair W, Pulk R, Stanley M, Starovasnik M, Williams D, Lamers M, Leonard P, Magnuson S, Liang J, Eigenbrot C, Proteins. 2010 Oct 7. PMID:21117080
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3nyx.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 3NYX
  • CSU: Contacts of Structural Units for 3NYX
  • Structure Factors (160 Kb)
  • Retrieve 3NYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NYX from S2C, [Save to disk]
  • Re-refined 3nyx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NYX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NYX, from MSDmotif at EBI
  • Fold representative 3nyx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nyx_A] [3nyx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NYX: [TyrKc ] by SMART
  • Other resources with information on 3NYX
  • Community annotation for 3NYX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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