3NZ1 Lyase date Jul 15, 2010
title Crystal Structure Of Kemp Elimination Catalyst 1a53-2 Comple Transition State Analog 5-Nitro Benzotriazole
authors T.M.Lee, H.K.Privett, J.T.Kaiser, S.L.Mayo
compound source
Molecule: Indole-3-Glycerol Phosphate Synthase
Chain: A
Synonym: Igps
Ec: 4.1.1.48
Engineered: Yes
Mutation: Yes
 Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Gene: Indole-3-Glycerolphosphate Synthase, Sso0895, Trpc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.172 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.720 60.720 120.180 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.56 Å
ligand 3NY, SO4, TLA enzyme Lyase E.C.4.1.1.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIterative approach to computational enzyme design., Privett HK, Kiss G, Lee TM, Blomberg R, Chica RA, Thomas LM, Hilvert D, Houk KN, Mayo SL, Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3790-5. Epub 2012 Feb 22. PMID:22357762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3nz1.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3NZ1
  • CSU: Contacts of Structural Units for 3NZ1
  • Structure Factors (542 Kb)
  • Retrieve 3NZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NZ1 from S2C, [Save to disk]
  • Re-refined 3nz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NZ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NZ1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nz1_A] [3nz1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NZ1
  • Community annotation for 3NZ1 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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