3NZL Transcription date Jul 16, 2010
title Crystal Structure Of The N-Terminal Domain Of Dna-Binding Pr Satb1 From Homo Sapiens, Northeast Structural Genomics Cons Target Hr4435b
authors F.Forouhar, M.Abashidze, J.Seetharaman, A.P.Kuzin, P.Patel, R.Xia C.Ciccosanti, R.Shastry, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomic Consortium (Nesg)
compound source
Molecule: Dna-Binding Protein Satb1
Chain: A
Fragment: Sequence Database Residues 179-250
Synonym: Special At-Rich Sequence-Binding Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Satb1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 14-15c
symmetry Space Group: P 21 21 21
R_factor 0.148 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.926 43.480 42.461 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand MSE enzyme
note 3NZL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3nzl.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3NZL
  • CSU: Contacts of Structural Units for 3NZL
  • Structure Factors (433 Kb)
  • Retrieve 3NZL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NZL from S2C, [Save to disk]
  • Re-refined 3nzl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NZL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NZL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NZL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nzl_A] [3nzl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NZL
  • Community annotation for 3NZL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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