OCA Atlas for 3O0D

3O0D

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

K, MPD, MRD, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, D, G, F, B, E, A

Primary reference

Exploring the conformational states and rearrangements of Yarrowia lipolytica Lipase., Bordes F, Barbe S, Escalier P, Mourey L, Andre I, Marty A, Tranier S, Biophys J. 2010 Oct 6;99(7):2225-34. PMID:20923657

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]

Biological Unit Coordinates (3o0d.pdb1.gz) 59 Kb

Biological Unit Coordinates (3o0d.pdb2.gz) 59 Kb

Biological Unit Coordinates (3o0d.pdb3.gz) 58 Kb

Biological Unit Coordinates (3o0d.pdb4.gz) 56 Kb

Biological Unit Coordinates (3o0d.pdb5.gz) 59 Kb

Biological Unit Coordinates (3o0d.pdb6.gz) 57 Kb

Biological Unit Coordinates (3o0d.pdb7.gz) 52 Kb

LPC: Ligand-Protein Contacts for 3O0D

CSU: Contacts of Structural Units for 3O0D

Structure Factors (3419 Kb)

Retrieve 3O0D in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3O0D from S2C, [Save to disk]

Re-refined 3o0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O0D in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o0d] [3o0d_A] [3o0d_B] [3o0d_C] [3o0d_D] [3o0d_E] [3o0d_F] [3o0d_G]

SWISS-PROT database:

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