3O0G Transferase Transferase Activator date Jul 19, 2010
title Crystal Structure Of Cdk5:P25 In Complex With An Atp Analogu
authors M.Mapelli
compound source
Molecule: Cell Division Protein Kinase 5
Chain: A, B
Synonym: Cyclin-Dependent Kinase 5, Tau Protein Kinase II C Subunit, Tpkii Catalytic Subunit, Serinethreonine-Protein Pssalre;
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk5
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector: Baculovirus

Molecule: Cyclin-Dependent Kinase 5 Activator 1
Chain: D, E
Fragment: Unp Residues 146-293
Synonym: Cdk5 Activator 1, Cyclin-Dependent Kinase 5 Regula Subunit 1, Tpkii Regulatory Subunit, Cyclin-Dependent Kinas Activator 1, P25, P25, Tau Protein Kinase II 23 Kda Subunit
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: P25
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.226 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.124 117.124 155.599 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand 3O0 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDefining Cdk5 ligand chemical space with small molecule inhibitors of tau phosphorylation., Ahn JS, Radhakrishnan ML, Mapelli M, Choi S, Tidor B, Cuny GD, Musacchio A, Yeh LA, Kosik KS, Chem Biol. 2005 Jul;12(7):811-23. PMID:16039528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (3o0g.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (3o0g.pdb2.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 3O0G
  • CSU: Contacts of Structural Units for 3O0G
  • Structure Factors (1355 Kb)
  • Retrieve 3O0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O0G from S2C, [Save to disk]
  • Re-refined 3o0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O0G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O0G, from MSDmotif at EBI
  • Fold representative 3o0g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o0g] [3o0g_E] [3o0g_B] [3o0g_A] [3o0g_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O0G: [S_TKc ] by SMART
  • Other resources with information on 3O0G
  • Community annotation for 3O0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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