3O0I Chaperone Inhibitor date Jul 19, 2010
title Structure Of The Human Hsp90-Alpha N-Domain Bound To The Hsp Inhibitor Pu-H54
authors P.M.Seidler, D.T.Gewirth
compound source
Molecule: Hsp90aa1 Protein
Chain: A
Fragment: N-Terminal Domain Residues 1-236
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
symmetry Space Group: I 2 2 2
R_factor 0.207 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.711 90.881 98.603 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.47 Å
ligand P54 enzyme
Primary referenceParalog-selective Hsp90 inhibitors define tumor-specific regulation of HER2., Patel PD, Yan P, Seidler PM, Patel HJ, Sun W, Yang C, Que NS, Taldone T, Finotti P, Stephani RA, Gewirth DT, Chiosis G, Nat Chem Biol. 2013 Sep 1. doi: 10.1038/nchembio.1335. PMID:23995768
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3o0i.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3O0I
  • CSU: Contacts of Structural Units for 3O0I
  • Structure Factors (740 Kb)
  • Retrieve 3O0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O0I from S2C, [Save to disk]
  • Re-refined 3o0i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O0I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O0I, from MSDmotif at EBI
  • Fold representative 3o0i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o0i_A] [3o0i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O0I: [HATPase_c ] by SMART
  • Alignments of the sequence of 3O0I with the sequences similar proteins can be viewed for 3O0I's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3O0I
  • Community annotation for 3O0I at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science