3O0T Hydrolase date Jul 20, 2010
title Crystal Structure Of Human Phosphoglycerate Mutase Family Me (Pgam5) In Complex With Phosphate
authors A.Chaikuad, I.Alfano, S.Picaud, P.Filippakopoulos, A.Barr, F.Von C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, K.Takeda, H.I S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Phosphatase Pgam5, Mitoc
Chain: A, B
Fragment: Unp Residues 90-289
Synonym: Phosphoglycerate Mutase Family Member 5, Bcl-Xl-Bi Protein V68;
Ec: 3.1.3.16
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pgam5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.960 73.090 81.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, PO4 enzyme Hydrolase E.C.3.1.3.16 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (3o0t.pdb1.gz) 132 Kb
  • Biological Unit Coordinates (3o0t.pdb2.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 3O0T
  • CSU: Contacts of Structural Units for 3O0T
  • Structure Factors (500 Kb)
  • Retrieve 3O0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O0T from S2C, [Save to disk]
  • Re-refined 3o0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3O0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3O0T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O0T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o0t_B] [3o0t_A] [3o0t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O0T: [PGAM ] by SMART
    • Other resources with information on 3O0T
  • Community annotation for 3O0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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