3O17 Transferase date Jul 20, 2010
title Crystal Structure Of Jnk1-Alpha1 Isoform
authors C.Abad-Zapatero
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A, B
Fragment: Unp Residues 1-364
Synonym: Map Kinase 8, Mapk 8, Stress-Activated Protein Kin C-Jun N-Terminal Kinase 1, Jnk-46, Stress-Activated Protein
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jnk1, Mapk8, Prkm8, Sapk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1 10mer Peptide;
Chain: F, G
Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase S Protein 1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 32 2 1
R_factor 0.263 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.850 155.850 124.492 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand SO4 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3o17.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3o17.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (3o17.pdb3.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 3O17
  • CSU: Contacts of Structural Units for 3O17
  • Structure Factors (473 Kb)
  • Retrieve 3O17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O17 from S2C, [Save to disk]
  • Re-refined 3o17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O17
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O17, from MSDmotif at EBI
  • Fold representative 3o17 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o17_F] [3o17_G] [3o17] [3o17_A] [3o17_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O17: [S_TKc ] by SMART
  • Other resources with information on 3O17
  • Community annotation for 3O17 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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