3O17 Transferase date Jul 20, 2010
title Crystal Structure Of Jnk1-Alpha1 Isoform
authors C.Abad-Zapatero
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A, B
Fragment: Unp Residues 1-364
Synonym: Map Kinase 8, Mapk 8, Stress-Activated Protein Kin C-Jun N-Terminal Kinase 1, Jnk-46, Stress-Activated Protein
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jnk1, Mapk8, Prkm8, Sapk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1 10mer Peptide;
Chain: F, G
Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase S Protein 1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 32 2 1
R_factor 0.263 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.850 155.850 124.492 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand SO4 enzyme Transferase E.C.2.7.11.24 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3o17.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3o17.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (3o17.pdb3.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 3O17
  • CSU: Contacts of Structural Units for 3O17
  • Structure Factors (473 Kb)
  • Retrieve 3O17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O17 from S2C, [Save to disk]
  • Re-refined 3o17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O17
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O17, from MSDmotif at EBI
  • Fold representative 3o17 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o17_F] [3o17_G] [3o17] [3o17_A] [3o17_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O17: [S_TKc ] by SMART
  • Alignments of the sequence of 3O17 with the sequences similar proteins can be viewed for 3O17's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3O17
  • Community annotation for 3O17 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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