3O17	Transferase	date	Jul 20, 2010
title	Crystal Structure Of Jnk1-Alpha1 Isoform
authors	C.Abad-Zapatero
compound		source
Molecule: Mitogen-Activated Protein Kinase 8 Chain: A, B Fragment: Unp Residues 1-364 Synonym: Map Kinase 8, Mapk 8, Stress-Activated Protein Kin C-Jun N-Terminal Kinase 1, Jnk-46, Stress-Activated Protein Ec: 2.7.11.24 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jnk1, Mapk8, Prkm8, Sapk1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1 10mer Peptide; Chain: F, G Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase S Protein 1; Engineered: Yes		Synthetic: Yes Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
symmetry	Space Group: P 32 2 1	R_factor 0.263 R_Free 0.308
crystal cell	length a length b length c angle alpha angle beta angle gamma 155.850 155.850 124.492 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	SO4	enzyme	Transferase E.C.2.7.11.24 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (3o17.pdb1.gz) 57 Kb Biological Unit Coordinates (3o17.pdb2.gz) 57 Kb Biological Unit Coordinates (3o17.pdb3.gz) 112 Kb LPC: Ligand-Protein Contacts for 3O17 CSU: Contacts of Structural Units for 3O17 Structure Factors (479 Kb) Retrieve 3O17 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O17 from S2C, [Save to disk] Re-refined 3o17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O17 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3O17

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3O17, from MSDmotif at EBI Fold representative 3o17 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o17_A] [3o17_B] [3o17_F] [3o17_G] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3O17 with the sequences similar proteins can be viewed for 3O17's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3O17

Community annotation for 3O17 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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