3O2M Transferase Inhibitor date Jul 22, 2010
title Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A Biar Tetrazol (A-82118)
authors C.Abad-Zapatero
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A, B
Fragment: Unp Residues 1-364
Synonym: Map Kinase 8, Mapk 8, Stress-Activated Protein Kin C-Jun N-Terminal Kinase 1, Jnk-46, Stress-Activated Protein
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jnk1, Mapk8, Prkm8, Sapk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1 10mer Peptide;
Chain: F, G
Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase S Protein 1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 32 2 1
R_factor 0.233 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.379 158.379 123.959 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand 46A, SO4 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Primary referenceDiscovery and Characterization of Non-ATP Site Inhibitors of the Mitogen Activated Protein (MAP) Kinases., Comess KM, Sun C, Abad-Zapatero C, Goedken ER, Gum RJ, Borhani DW, Argiriadi M, Groebe DR, Jia Y, Clampit JE, Haasch DL, Smith HT, Wang S, Song D, Coen ML, Cloutier TE, Tang H, Cheng X, Quinn C, Liu B, Xin Z, Liu G, Fry EH, Stoll V, Ng TI, Banach D, Marcotte D, Burns DJ, Calderwood DJ, Hajduk PJ, ACS Chem Biol. 2011 Jan 20. PMID:21090814
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (3o2m.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (3o2m.pdb2.gz) 59 Kb
  • Biological Unit Coordinates (3o2m.pdb3.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 3O2M
  • CSU: Contacts of Structural Units for 3O2M
  • Structure Factors (685 Kb)
  • Retrieve 3O2M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O2M from S2C, [Save to disk]
  • Re-refined 3o2m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O2M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O2M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O2M, from MSDmotif at EBI
  • Fold representative 3o2m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o2m_F] [3o2m] [3o2m_A] [3o2m_G] [3o2m_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O2M: [S_TKc ] by SMART
  • Alignments of the sequence of 3O2M with the sequences similar proteins can be viewed for 3O2M's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3O2M
  • Community annotation for 3O2M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science