3O33	Transcription	date	Jul 23, 2010
title	Crystal Structure Of Trim24 Phd-Bromo In The Free State
authors	Z.Wang, D.J.Patel
compound		source
Molecule: Transcription Intermediary Factor 1-Alpha Chain: A, B, C, D Fragment: Unp Residues 824-1006 Synonym: Tif1-Alpha, Tripartite Motif-Containing Protein 24 Finger Protein 82; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Trim24, Rnf82, Tif1, Tif1a Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsfduet-1
symmetry	Space Group: P 1	R_factor 0.221 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.482 48.498 122.729 86.45 81.46 67.84
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ZN	enzyme
Primary reference	TRIM24 links a non-canonical histone signature to breast cancer., Tsai WW, Wang Z, Yiu TT, Akdemir KC, Xia W, Winter S, Tsai CY, Shi X, Schwarzer D, Plunkett W, Aronow B, Gozani O, Fischle W, Hung MC, Patel DJ, Barton MC, Nature. 2010 Dec 16;468(7326):927-32. PMID:21164480

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (3o33.pdb1.gz) 30 Kb Biological Unit Coordinates (3o33.pdb2.gz) 32 Kb Biological Unit Coordinates (3o33.pdb3.gz) 32 Kb Biological Unit Coordinates (3o33.pdb4.gz) 30 Kb LPC: Ligand-Protein Contacts for 3O33 CSU: Contacts of Structural Units for 3O33 Structure Factors (401 Kb) Retrieve 3O33 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O33 from S2C, [Save to disk] Re-refined 3o33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O33 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3O33

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3O33, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o33_B] [3o33_A] [3o33_C] [3o33] [3o33_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3O33: [BROMO] [PHD ] by SMART

Other resources with information on 3O33

Community annotation for 3O33 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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