3O46 Protein Binding date Jul 26, 2010
title Crystal Structure Of The Pdz Domain Of Mpp7
authors L.Nedyalkova, Y.Tong, W.Tempel, N.Zhong, X.Guan, R.Landry, C.H.Arr A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Maguk P55 Subfamily Member 7
Chain: A
Fragment: Pdz Domain (Unp Residues 135-225)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mpp7
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 63
R_factor 0.184 R_Free 0.191
length a length b length c angle alpha angle beta angle gamma
66.616 66.616 46.475 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand MSE, UNX enzyme
note 3O46 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3o46.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3O46
  • CSU: Contacts of Structural Units for 3O46
  • Structure Factors (668 Kb)
  • Retrieve 3O46 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O46 from S2C, [Save to disk]
  • Re-refined 3o46 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O46 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O46
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O46, from MSDmotif at EBI
  • Fold representative 3o46 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o46] [3o46_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O46: [PDZ ] by SMART
  • Other resources with information on 3O46
  • Community annotation for 3O46 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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