3O55 Flavoprotein date Jul 28, 2010
title Crystal Structure Of Human Fad-Linked Augmenter Of Liver Reg (Alr)
authors L.Banci, I.Bertini, V.Calderone, C.Cefaro, S.Ciofi-Baffoni, A.Gal E.Kallergi, E.Lionaki, C.Pozidis, K.Tokatlidis
compound source
Molecule: Augmenter Of Liver Regeneration
Chain: A
Fragment: Unp Residues 80 To 204
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.182 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.849 76.566 62.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular recognition and substrate mimicry drive the electron-transfer process between MIA40 and ALR., Banci L, Bertini I, Calderone V, Cefaro C, Ciofi-Baffoni S, Gallo A, Kallergi E, Lionaki E, Pozidis C, Tokatlidis K, Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):4811-6. Epub 2011 Mar 7. PMID:21383138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3o55.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3O55
  • CSU: Contacts of Structural Units for 3O55
  • Structure Factors (501 Kb)
  • Retrieve 3O55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O55 from S2C, [Save to disk]
  • Re-refined 3o55 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O55 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O55
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O55, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o55_A] [3o55]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3O55
  • Community annotation for 3O55 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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