3O5F Isomerase date Jul 28, 2010
title Fk1 Domain Of Fkbp51, Crystal Form Vii
authors A.Bracher, C.Kozany, A.K.Thost, F.Hausch
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp5
Chain: A
Synonym: Ppiase Fkbp5, Fk506-Binding Protein 5, Fkbp-5, Rot Kda Fk506-Binding Protein, 51 Kda Fkbp, Fkbp-51, 54 Kda Pro Receptor-Associated Immunophilin, Fkbp54, P54, Ff1 Antigen, Binding Immunophilin, Androgen-Regulated Protein 6;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aig6, Fkbp5, Fkbp51
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon+ Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Hta
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.679 49.703 66.978 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CO3 enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of the PPIase domain of FKBP51, a cochaperone of human Hsp90., Bracher A, Kozany C, Thost AK, Hausch F, Acta Crystallogr D Biol Crystallogr. 2011 Jun;67(Pt 6):549-59. Epub 2011 May 17. PMID:21636895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3o5f.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3O5F
  • CSU: Contacts of Structural Units for 3O5F
  • Structure Factors (212 Kb)
  • Retrieve 3O5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O5F from S2C, [Save to disk]
  • Re-refined 3o5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O5F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O5F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o5f_A] [3o5f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3O5F
  • Community annotation for 3O5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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