3O64 Hydrolase Hydrolase Inhibitor date Jul 28, 2010
title Crystal Structure Of Catalytic Domain Of Tace With 2-(2-Amin 4-Yl)Pyrrolidine-Based Tartrate Diamides
authors P.Orth
compound source
Molecule: Tace
Chain: A, B
Fragment: Tace
Synonym: Adam 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Co Snake Venom-Like Protease, Disintegrin And Metalloproteinas Containing Protein 17;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.446 76.508 103.866 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand 786, CA, INN, IPA, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Primary reference2-(2-Aminothiazol-4-yl)pyrrolidine-based tartrate diamides as potent, selective and orally bioavailable TACE inhibitors., Dai C, Li D, Popovici-Muller J, Zhao L, Girijavallabhan VM, Rosner KE, Lavey BJ, Rizvi R, Shankar BB, Wong MK, Guo Z, Orth P, Strickland CO, Sun J, Niu X, Chen S, Kozlowski JA, Lundell DJ, Piwinski JJ, Shih NY, Siddiqui MA, Bioorg Med Chem Lett. 2011 Jan 6. PMID:21458257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (3o64.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (3o64.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3O64
  • CSU: Contacts of Structural Units for 3O64
  • Structure Factors (961 Kb)
  • Retrieve 3O64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O64 from S2C, [Save to disk]
  • Re-refined 3o64 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O64
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O64, from MSDmotif at EBI
  • Fold representative 3o64 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o64_B] [3o64_A] [3o64]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3O64
  • Community annotation for 3O64 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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