3O65	Hydrolase Protein Binding	date	Jul 28, 2010
title	Crystal Structure Of A Josephin-Ubiquitin Complex: Evolution Restraints On Ataxin-3 Deubiquitinating Activity
authors	S.D.Weeks, K.C.Grasty, L.Hernandez-Cuebas, P.J.Loll
compound		source
Molecule: Putative Ataxin-3-Like Protein Chain: A, C, E, G Fragment: Josephin Domain Synonym: Machado-Joseph Disease Protein 1-Like Ec: 3.1.2.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Atx3l, Atxn3l, Mjdl Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pethsul
Molecule: Ubiquitin Chain: B, D, F, H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petxsh
symmetry	Space Group: P 3 2 1	R_factor 0.176 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.150 159.150 146.290 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	MSE, NA, NEH	enzyme	Hydrolase E.C.3.1.2.15 BRENDA
note	3O65 is a representative structure
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Crystal Structure of a Josephin-Ubiquitin Complex: EVOLUTIONARY RESTRAINTS ON ATAXIN-3 DEUBIQUITINATING ACTIVITY., Weeks SD, Grasty KC, Hernandez-Cuebas L, Loll PJ, J Biol Chem. 2011 Feb 11;286(6):4555-65. Epub 2010 Nov 30. PMID:21118805

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (374 Kb) [Save to disk] Biological Unit Coordinates (3o65.pdb1.gz) 92 Kb Biological Unit Coordinates (3o65.pdb2.gz) 92 Kb Biological Unit Coordinates (3o65.pdb3.gz) 95 Kb Biological Unit Coordinates (3o65.pdb4.gz) 93 Kb Biological Unit Coordinates (3o65.pdb5.gz) 1076 Kb Biological Unit Coordinates (3o65.pdb6.gz) 272 Kb Biological Unit Coordinates (3o65.pdb7.gz) 766 Kb LPC: Ligand-Protein Contacts for 3O65 CSU: Contacts of Structural Units for 3O65 Structure Factors (1045 Kb) Retrieve 3O65 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O65 from S2C, [Save to disk] Re-refined 3o65 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O65 in 3D

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Visual 3D analysis of 3O65

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3O65, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o65_E] [3o65_B] [3o65] [3o65_C] [3o65_F] [3o65_G] [3o65_A] [3o65_H] [3o65_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3O65: [Josephin] [UBQ ] by SMART

Other resources with information on 3O65

Community annotation for 3O65 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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