3O8D	Hydrolase	date	Aug 02, 2010
title	Visualizing Atp-Dependent Rna Translocation By The Ns3 Helic Hcv
authors	T.C.Appleby, J.R.Somoza
compound		source
Molecule: Hcv Ns3 Proteasehelicase Chain: A, B Ec: 3.4.21.98, 3.6.1.15, 3.6.4.13 Engineered: Yes		Organism_scientific: Hepatitis C Virus Subtype 1b Organism_taxid: 31647 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.749 110.416 144.374 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	ADP, BEF, MG, SO4	enzyme	Hydrolase E.C.3.4.21.98 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV., Appleby TC, Anderson R, Fedorova O, Pyle AM, Wang R, Liu X, Brendza KM, Somoza JR, J Mol Biol. 2010 Dec 9. PMID:21145896

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk] Biological Unit Coordinates (3o8d.pdb1.gz) 208 Kb LPC: Ligand-Protein Contacts for 3O8D CSU: Contacts of Structural Units for 3O8D Structure Factors (751 Kb) Retrieve 3O8D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O8D from S2C, [Save to disk] Re-refined 3o8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O8D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3O8D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3O8D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o8d] [3o8d_B] [3o8d_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3O8D: [DEXDc ] by SMART

Other resources with information on 3O8D

Community annotation for 3O8D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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