3O8E Cell Adhesion Immune System date Aug 03, 2010
title Structure Of Extracelllar Portion Of Cd46 In Complex With Ad Type 11 Knob
authors B.D.Persson, N.B.Schmitz, J.M.Casasnovas, T.Stehle
compound source
Molecule: Fiber 36.1 Kda Protein
Chain: A, C
Fragment: Adenovirus 11 Knob (Unp Residues 117-325)
Engineered: Yes
Organism_scientific: Human Adenovirus 11
Organism_taxid: 10541
Gene: Cd46, Mcp, Mic10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b

Molecule: Membrane Cofactor Protein
Chain: B, D
Fragment: Cd46 Scr1-Scr4 (Unp Residues 35-286)
Synonym: Trophoblast Leukocyte Common Antigen, Tlx
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Chinese Hamster Ovary (Cho) Ce
symmetry Space Group: P 63
R_factor 0.210 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.160 108.160 222.990 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.84 Å
ligand DTD, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure of the extracellular portion of CD46 provides insights into its interactions with complement proteins and pathogens., Persson BD, Schmitz NB, Santiago C, Zocher G, Larvie M, Scheu U, Casasnovas JM, Stehle T, PLoS Pathog. 2010 Sep 30;6(9). pii: e1001122. PMID:20941397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (3o8e.pdb1.gz) 438 Kb
  • Biological Unit Coordinates (3o8e.pdb2.gz) 436 Kb
  • LPC: Ligand-Protein Contacts for 3O8E
  • CSU: Contacts of Structural Units for 3O8E
  • Structure Factors (748 Kb)
  • Retrieve 3O8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O8E from S2C, [Save to disk]
  • Re-refined 3o8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O8E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O8E, from MSDmotif at EBI
  • Fold representative 3o8e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o8e_A] [3o8e_B] [3o8e] [3o8e_C] [3o8e_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O8E: [CCP ] by SMART
  • Other resources with information on 3O8E
  • Community annotation for 3O8E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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