3O8V Protein Binding date Aug 03, 2010
title Crystal Structure Of The Tudor Domains From Fxr1
authors R.Lam, Y.H.Guo, M.Adams-Cioaba, C.B.Bian, F.Mackenzie, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Stru Genomics Consortium (Sgc)
compound source
Molecule: Fragile X Mental Retardation Syndrome-Related Pro
Chain: A
Fragment: Residues 2-132
Synonym: Hfxr1p
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fxr1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: H 3
R_factor 0.218 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.857 71.857 94.055 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies of the tandem Tudor domains of fragile X mental retardation related proteins FXR1 and FXR2., Adams-Cioaba MA, Guo Y, Bian C, Amaya MF, Lam R, Wasney GA, Vedadi M, Xu C, Min J, PLoS One. 2010 Nov 2;5(11):e13559. PMID:21072162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (3o8v.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 3O8V
  • Structure Factors (182 Kb)
  • Retrieve 3O8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O8V from S2C, [Save to disk]
  • Re-refined 3o8v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3O8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3O8V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O8V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o8v_A] [3o8v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3O8V
  • Community annotation for 3O8V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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