3O8Y Oxidoreductase date Aug 03, 2010
title Stable-5-Lipoxygenase
authors M.E.Newcomer, N.C.Gilbert, S.G.Bartlett, M.T.Waight, D.B.Neau, W.E.Boeglin, A.R.Brash
compound source
Molecule: Arachidonate 5-Lipoxygenase
Chain: A, B
Synonym: Stable-5-Lipoxygenase, 5-Lipoxygenase, 5-Lo
Ec: 1.13.11.34
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alox5, Log5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.170 202.890 76.800 90.00 109.56 90.00
method X-Ray Diffractionresolution 2.39 Å
ligand FE2 enzyme Oxidoreductase E.C.1.13.11.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of human 5-lipoxygenase., Gilbert NC, Bartlett SG, Waight MT, Neau DB, Boeglin WE, Brash AR, Newcomer ME, Science. 2011 Jan 14;331(6014):217-9. PMID:21233389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (440 Kb) [Save to disk]
  • Biological Unit Coordinates (3o8y.pdb1.gz) 218 Kb
  • Biological Unit Coordinates (3o8y.pdb2.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 3O8Y
  • CSU: Contacts of Structural Units for 3O8Y
  • Structure Factors (406 Kb)
  • Retrieve 3O8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O8Y from S2C, [Save to disk]
  • Re-refined 3o8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O8Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O8Y, from MSDmotif at EBI
  • Fold representative 3o8y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o8y_A] [3o8y_B] [3o8y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O8Y: [LH2 ] by SMART
  • Other resources with information on 3O8Y
  • Community annotation for 3O8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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