3O96 Transferase date Aug 03, 2010
title Crystal Structure Of Human Akt1 With An Allosteric Inhibitor
authors W.C.Voegtli, W.I.Wu, H.A.Lord-Ondash, F.P.Dizon, G.P.A.Vigers, B.J.Brandhuber
compound source
Molecule: Rac-Alpha Serinethreonine-Protein Kinase
Chain: A
Fragment: Unp Residues 2-443
Synonym: Rac-Pk-Alpha, Protein Kinase B, Pkb, Proto-Oncogen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt1, Pkb, Rac
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Hi5 Insect Cells
symmetry Space Group: P 1 21 1
R_factor 0.245 R_Free 0.308
length a length b length c angle alpha angle beta angle gamma
49.310 69.940 61.850 90.00 100.60 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand IQO BindingDB enzyme Transferase E.C. BRENDA
  • protein phosphorylation

  • Primary referenceCrystal structure of human AKT1 with an allosteric inhibitor reveals a new mode of kinase inhibition., Wu WI, Voegtli WC, Sturgis HL, Dizon FP, Vigers GP, Brandhuber BJ, PLoS One. 2010 Sep 23;5(9):e12913. PMID:20886116
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3o96.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3O96
  • CSU: Contacts of Structural Units for 3O96
  • Structure Factors (198 Kb)
  • Retrieve 3O96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O96 from S2C, [Save to disk]
  • Re-refined 3o96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3O96, from MSDmotif at EBI
  • Fold representative 3o96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o96] [3o96_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3O96: [PH] [S_TK_X] [S_TKc ] by SMART
  • Alignments of the sequence of 3O96 with the sequences similar proteins can be viewed for 3O96's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3O96
  • Community annotation for 3O96 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science