3O9F	Hydrolase Hydrolase Inhibitor	date	Aug 04, 2010
title	Crystal Structure Of Wild-Type Hiv-1 Protease In Complex Wit
authors	C.A.Schiffer, M.N.L.Nalam
compound		source
Molecule: Protease Chain: A, B Fragment: Hiv-1 Protease (Unp Residues 1 To 99) Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_common: Hiv-1 Organism_taxid: 11676 Strain: Hxb2 Gene: Gag-Pol, Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tap106 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pxc35
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.773 57.934 61.794 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	ACT, K2D, PO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Substrate envelope-designed potent HIV-1 protease inhibitors to avoid drug resistance., Nalam MN, Ali A, Reddy GS, Cao H, Anjum SG, Altman MD, Yilmaz NK, Tidor B, Rana TM, Schiffer CA, Chem Biol. 2013 Sep 19;20(9):1116-24. doi: 10.1016/j.chembiol.2013.07.014. Epub, 2013 Sep 5. PMID:24012370

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (3o9f.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 3O9F CSU: Contacts of Structural Units for 3O9F Structure Factors (142 Kb) Retrieve 3O9F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O9F from S2C, [Save to disk] Re-refined 3o9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O9F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3O9F

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3O9F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o9f_A] [3o9f_B] [3o9f] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3O9F

Community annotation for 3O9F at PDBWiki (http://pdbwiki.org)

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