3O9K Hydrolase date Aug 04, 2010
title Influenza Na In Complex With Compound 6
authors R.J.Russell, P.S.Kerry
compound source
Molecule: Neuraminidase
Chain: A
Fragment: Unp Residues 81-467
Ec: 3.2.1.18
 Organism_scientific: Influenza A Virus (Aduckukraine119 );
Organism_taxid: 385580
Strain: Aduckukraine11963 H3n8
symmetry Space Group: I 4
R_factor 0.220 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.491 90.491 107.778 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand ETT enzyme Hydrolase E.C.3.2.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel sialic acid derivatives lock open the 150-loop of an influenza A virus group-1 sialidase., Rudrawar S, Dyason JC, Rameix-Welti MA, Rose FJ, Kerry PS, Russell RJ, van der Werf S, Thomson RJ, Naffakh N, von Itzstein M, Nat Commun. 2010 Nov;1(8):113. Epub 2010 Nov 16. PMID:21081911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3o9k.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 3O9K
  • CSU: Contacts of Structural Units for 3O9K
  • Structure Factors (301 Kb)
  • Retrieve 3O9K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O9K from S2C, [Save to disk]
  • Re-refined 3o9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3O9K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3O9K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O9K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o9k_A] [3o9k]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3O9K
  • Community annotation for 3O9K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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