3O9S Viral Protein date Aug 04, 2010
title Effector Domain Of Influenza Apr834 Ns1
authors P.S.Kerry, A.Lewis, B.G.Hale, C.Hass, M.A.Taylor, R.E.Randall, R.J.M.Russell
compound source
Molecule: Nonstructural Protein 1
Chain: A, B
Engineered: Yes
 Organism_scientific: Influenza A Virus
Organism_common: Areassortantivr108(Sydney51995 X Puert Rico81934)(H3n2);
Organism_taxid: 671829
Gene: Ns1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.676 56.941 101.431 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Transient Homotypic Interaction Model for the Influenza A Virus NS1 Protein Effector Domain., Kerry PS, Ayllon J, Taylor MA, Hass C, Lewis A, Garcia-Sastre A, Randall RE, Hale BG, Russell RJ, PLoS One. 2011 Mar 28;6(3):e17946. PMID:21464929
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3o9s.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3O9S
  • Structure Factors (214 Kb)
  • Retrieve 3O9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O9S from S2C, [Save to disk]
  • Re-refined 3o9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3O9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3O9S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O9S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o9s] [3o9s_B] [3o9s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3O9S
  • Community annotation for 3O9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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