OCA Atlas for 3O9V

3O9V

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

10T, NAG BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A, D, B	virus receptor activity chemorepellent activity

Primary reference

Discovery of a 3-Pyridylacetic Acid Derivative (TAK-100) as a Potent, Selective and Orally Active Dipeptidyl Peptidase IV (DPP-4) Inhibitor., Miyamoto Y, Banno Y, Yamashita T, Fujimoto T, Oi S, Moritoh Y, Asakawa T, Kataoka O, Yashiro H, Takeuchi K, Suzuki N, Ikedo K, Kosaka T, Tsubotani S, Tani A, Sasaki M, Funami M, Amano M, Yamamoto Y, Aertgeerts K, Yano J, Maezaki H, J Med Chem. 2011 Jan 10. PMID:21218817

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk]

Biological Unit Coordinates (3o9v.pdb1.gz) 478 Kb

Biological Unit Coordinates (3o9v.pdb2.gz) 243 Kb

Biological Unit Coordinates (3o9v.pdb3.gz) 242 Kb

LPC: Ligand-Protein Contacts for 3O9V

CSU: Contacts of Structural Units for 3O9V

Structure Factors (1560 Kb)

Retrieve 3O9V in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3O9V from S2C, [Save to disk]

Re-refined 3o9v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O9V in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o9v] [3o9v_A] [3o9v_B] [3o9v_C] [3o9v_D]

SWISS-PROT database:

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