3OAP	Transcription	date	Aug 05, 2010
title	Crystal Structure Of Human Retinoid X Receptor Alpha-Ligand Domain Complex With 9-Cis Retinoic Acid And The Coactivator Grip-1
authors	G.Xia, C.D.Smith, D.D.Muccio
compound		source
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: A Fragment: Hrxralpha-Lbd, Unp Residues 228-458 Synonym: Retinoid X Receptor Alpha, Nuclear Receptor Subfam Group B Member 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rxra, Nr2b1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor Coactivator 2 Chain: B Fragment: Grip-1, Unp Residues 686-696 Synonym: Ncoa-2, Transcriptional Intermediary Factor 2, Hti E Basic Helix-Loop-Helix Protein 75, Bhlhe75, Glucocorticoi Interacting Protein-1 (Grip-1); Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 43 21 2	R_factor 0.204 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.831 65.831 111.856 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	REA BindingDB	enzyme
Gene Ontology	Chain Function Process Component A DNA binding sequence-specific DNA bindin... retinoic acid receptor activ... transcription coactivator ac... ligand-activated sequence-sp... 9-cis retinoic acid receptor... protein binding transcription factor binding... enzyme binding chromatin DNA binding vitamin D receptor binding sequence-specific DNA bindin... transcription regulatory reg... retinoic acid-responsive ele... metal ion binding protein heterodimerization a... vitamin D response element b... negative regulation of trans... in utero embryonic developme... placenta development maternal placenta developmen... transcription, DNA-dependent... regulation of transcription,... regulation of transcription ... transcription initiation fro... vitamin metabolic process heart development embryo implantation cholesterol metabolic proces... gene expression virus-host interaction response to retinoic acid peroxisome proliferator acti... cellular lipid metabolic pro... small molecule metabolic pro... positive regulation of trans... positive regulation of trans... retinoic acid receptor signa... ventricular cardiac muscle t... ventricular cardiac muscle c... cardiac muscle cell prolifer... secretory columnal luminar e... regulation of branching invo... nuclear chromatin nucleus nucleoplasm
Primary reference	Structure, Energetics and Dynamics of Binding Coactivator Peptide to Human Retinoid X Receptor Alpha Ligand Binding Domain Complex with 9-cis-Retinoic Acid., Xia G, Boerma LJ, Cox BD, Qiu C, Kang S, Smith CD, Renfrow MB, Muccio DD, Biochemistry. 2010 Nov 4. PMID:21049972

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (3oap.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 3OAP CSU: Contacts of Structural Units for 3OAP Structure Factors (232 Kb) Retrieve 3OAP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OAP from S2C, [Save to disk] Re-refined 3oap structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3OAP, from MSDmotif at EBI Fold representative 3oap from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oap_A] [3oap_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3OAP with the sequences similar proteins can be viewed for 3OAP's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

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