3OC0 Hydrolase date Aug 09, 2010
title Structure Of Human Dpp-Iv With Hts Hit (2s,3s,11bs)-3-Butyl- Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-A]Isoquinol Ylamine
authors M.Hennig, M.Stihle, R.Thoma
compound source
Molecule: Dipeptidyl Peptidase 4
Chain: A, B
Synonym: Dipeptidyl Peptidase Iv, Dpp Iv, T-Cell Activation Cd26, Tp103, Adenosine Deaminase Complexing Protein 2, Adcp Dipeptidyl Peptidase 4 Membrane Form, Dipeptidyl Peptidase Membrane Form, Dipeptidyl Peptidase 4 Soluble Form, Dipepti Peptidase Iv Soluble Form;
Ec: 3.4.14.5
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.236 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.561 68.487 421.411 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand B2Q, NAG BindingDB enzyme Hydrolase E.C.3.4.14.5 BRENDA
note 3OC0 supersedes 3KWH
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • virus receptor activity
  • chemorepellent activity


    • Primary referenceDiscovery of carmegliptin: A potent and long-acting dipeptidyl peptidase IV inhibitor for the treatment of type 2 diabetes., Mattei P, Boehringer M, Di Giorgio P, Fischer H, Hennig M, Huwyler J, Kocer B, Kuhn B, Loeffler BM, Macdonald A, Narquizian R, Rauber E, Sebokova E, Sprecher U, Bioorg Med Chem Lett. 2009 Dec 6. PMID:20031405
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (3oc0.pdb1.gz) 238 Kb
  • LPC: Ligand-Protein Contacts for 3OC0
  • CSU: Contacts of Structural Units for 3OC0
  • Structure Factors (770 Kb)
  • Retrieve 3OC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OC0 from S2C, [Save to disk]
  • Re-refined 3oc0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OC0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oc0_A] [3oc0] [3oc0_B]
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  • Domain organization of by SWISSPFAM
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  • Community annotation for 3OC0 at PDBWiki (http://pdbwiki.org)
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