3OCB	Transferase	date	Aug 09, 2010
title	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
authors	T.H.Morales, G.P.A.Vigers, B.J.Brandhuber
compound		source
Molecule: V-Akt Murine Thymoma Viral Oncogene Homolog 1 (Ak Chain: A, B Fragment: Kinase Domain (Residues 144-480) Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Akt1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Gsk 3 Beta Peptide Chain: C, D Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1 21 1	R_factor 0.214 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.265 56.013 91.650 90.00 104.27 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	TPO, XM1 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of pyrrolopyrimidine inhibitors of Akt., Blake JF, Kallan NC, Xiao D, Xu R, Bencsik JR, Skelton NJ, Spencer KL, Mitchell IS, Woessner RD, Gloor SL, Risom T, Gross SD, Martinson M, Morales TH, Vigers GP, Brandhuber BJ, Bioorg Med Chem Lett. 2010 Oct 1;20(19):5607-12. Epub 2010 Aug 13. PMID:20810279

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (3ocb.pdb1.gz) 57 Kb Biological Unit Coordinates (3ocb.pdb2.gz) 57 Kb LPC: Ligand-Protein Contacts for 3OCB CSU: Contacts of Structural Units for 3OCB Structure Factors (176 Kb) Retrieve 3OCB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OCB from S2C, [Save to disk] Re-refined 3ocb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OCB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OCB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OCB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ocb_A] [3ocb] [3ocb_C] [3ocb_B] [3ocb_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3OCB: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 3OCB

Community annotation for 3OCB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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