3OCB Transferase date Aug 09, 2010
title Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
authors T.H.Morales, G.P.A.Vigers, B.J.Brandhuber
compound source
Molecule: V-Akt Murine Thymoma Viral Oncogene Homolog 1 (Ak
Chain: A, B
Fragment: Kinase Domain (Residues 144-480)
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Gsk 3 Beta Peptide
Chain: C, D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.265 56.013 91.650 90.00 104.27 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand TPO, XM1 BindingDB enzyme
Primary referenceDiscovery of pyrrolopyrimidine inhibitors of Akt., Blake JF, Kallan NC, Xiao D, Xu R, Bencsik JR, Skelton NJ, Spencer KL, Mitchell IS, Woessner RD, Gloor SL, Risom T, Gross SD, Martinson M, Morales TH, Vigers GP, Brandhuber BJ, Bioorg Med Chem Lett. 2010 Oct 1;20(19):5607-12. Epub 2010 Aug 13. PMID:20810279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3ocb.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3ocb.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3OCB
  • CSU: Contacts of Structural Units for 3OCB
  • Structure Factors (176 Kb)
  • Retrieve 3OCB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OCB from S2C, [Save to disk]
  • Re-refined 3ocb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OCB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OCB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OCB, from MSDmotif at EBI
  • Fold representative 3ocb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ocb_A] [3ocb] [3ocb_C] [3ocb_B] [3ocb_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3OCB: [S_TK_X] [S_TKc ] by SMART
  • Alignments of the sequence of 3OCB with the sequences similar proteins can be viewed for 3OCB's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OCB
  • Community annotation for 3OCB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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