3OD8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MSE, ZN enzyme
note 3OD8 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, B, G, E, A, D, H, C


Primary referenceCrystal Structures of Poly(ADP-ribose) Polymerase-1 (PARP-1) Zinc Fingers Bound to DNA: STRUCTURAL AND FUNCTIONAL INSIGHTS INTO DNA-DEPENDENT PARP-1 ACTIVITY., Langelier MF, Planck JL, Roy S, Pascal JM, J Biol Chem. 2011 Mar 25;286(12):10690-701. Epub 2011 Jan 13. PMID:21233213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (3od8.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3od8.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (3od8.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (3od8.pdb4.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3OD8
  • CSU: Contacts of Structural Units for 3OD8
  • Structure Factors (2389 Kb)
  • Retrieve 3OD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OD8 from S2C, [Save to disk]
  • Re-refined 3od8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3od8] [3od8_A] [3od8_B] [3od8_C] [3od8_D] [3od8_E] [3od8_F] [3od8_G] [3od8_H] [3od8_I] [3od8_J] [3od8_K] [3od8_L] [3od8_M] [3od8_N] [3od8_O] [3od8_P]
  • SWISS-PROT database:
  • Domain found in 3OD8: [zf-PARP ] by SMART

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