3OEE Hydrolase date Aug 12, 2010
title Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-F40
authors D.Arsenieva, J.Symersky, Y.Wang, V.Pagadala, D.M.Mueller
compound source
Molecule: Atp Synthase Subunit Alpha
Chain: A, B, C, J, K, L, S, T, U
Fragment: Unp Residues 36-545
Ec: 3.6.3.14
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Atp1, Ybl099w, Ybl0827
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Atp Synthase Subunit Beta
Chain: D, E, F, M, N, O, V, W, X
Fragment: Unp Residues 34-511
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Atp2, Yjr121w, J2041
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Atp Synthase Subunit Gamma
Chain: G, P, Y
Fragment: Unp Residues 34-311
Synonym: F-Atpase Gamma Subunit
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Atp3, Atp3a, Atp3b, Ybr039w, Ybr0408
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Atp Synthase Subunit Delta
Chain: H, Q, Z
Fragment: Unp Residues 23-160
Synonym: F-Atpase Delta Subunit
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Atp16, Ydl004w, Yd8119.03, D2935
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Atp Synthase Subunit Epsilon
Chain: I, R, 1
Fragment: Unp Residues 2-62
Synonym: Atpase Subunit Epsilon
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Atp15, Ypl271w, P0345
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.430 288.580 187.170 90.00 101.37 90.00
method X-Ray Diffractionresolution 2.74 Å
ligand ANP, MG, PO4 enzyme Hydrolase E.C.3.6.3.14 BRENDA
note 3OEE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
1, R, I


F, N, E, V, M, O, W, X, D


S, T, K, C, L, A, J, B, U


Y, P, G


Z, Q, H


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3024 Kb) [Save to disk]
  • Biological Unit Coordinates (3oee.pdb1.gz) 1039 Kb
  • Biological Unit Coordinates (3oee.pdb2.gz) 1012 Kb
  • Biological Unit Coordinates (3oee.pdb3.gz) 987 Kb
  • LPC: Ligand-Protein Contacts for 3OEE
  • CSU: Contacts of Structural Units for 3OEE
  • Structure Factors (2413 Kb)
  • Retrieve 3OEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OEE from S2C, [Save to disk]
  • Re-refined 3oee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OEE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OEE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oee_A] [3oee_J] [3oee_Q] [3oee_K] [3oee_M] [3oee_C] [3oee_S] [3oee_Z] [3oee_U] [3oee_I] [3oee_1] [3oee_W] [3oee_D] [3oee_F] [3oee_L] [3oee_N] [3oee_T] [3oee_O] [3oee_H] [3oee_V] [3oee_E] [3oee_X] [3oee] [3oee_R] [3oee_Y] [3oee_P] [3oee_G] [3oee_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OEE: [AAA ] by SMART
    • Other resources with information on 3OEE
  • Community annotation for 3OEE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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