3OG6 Cytokine Cytokine Receptor date Aug 16, 2010
title The Crystal Structure Of Human Interferon Lambda 1 Complexed High Affinity Receptor In Space Group P212121
authors Z.J.Miknis, E.Magracheva, W.Lei, A.Zdanov, S.V.Kotenko, A.Wlodawe
compound source
Molecule: Interleukin-29
Chain: A
Synonym: Il-29, Interferon Lambda-1, Ifn-Lambda-1, Cytokine
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnl1, Il29, Zcyto21
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Virus
Expression_system_plasmid: Pmtbipv5-His

Molecule: Interleukin 28 Receptor, Alpha (Interferon, Lambd Receptor);
Chain: B
Fragment: Extracellular Domain (Unp Residue 19-226)
Synonym: Interleukin 28 Receptor, Alpha (Interferon, Lambda Receptor), Isoform Cra_e;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hcg_1982865, Il28ra, Rp11-10n16.1-001
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Virus
Expression_system_plasmid: Pmtbipv5-His
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.960 85.790 116.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BMA, GOL, NAG enzyme
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytokine activity
  • JAK-STAT cascade

  • Primary referenceCrystal Structure of Human Interferon-lambda1 in Complex with Its High-Affinity Receptor Interferon-lambdaR1., Miknis Z, Magracheva E, Li W, Zdanov A, Kotenko SV, Wlodawer A, J Mol Biol. 2010 Oct 8. PMID:20934432
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (3og6.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3OG6
  • CSU: Contacts of Structural Units for 3OG6
  • Structure Factors (799 Kb)
  • Retrieve 3OG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OG6 from S2C, [Save to disk]
  • Re-refined 3og6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OG6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OG6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c3og6, region G:677-935 [Jmol] [rasmolscript] [script source]
  • Fold representative 3og6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3og6] [3og6_B] [3og6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OG6
  • Community annotation for 3OG6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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