3OGJ Transferase date Aug 16, 2010
title Crystal Structure Of Partial Apo (92-227) Of Cgmp-Dependent Kinase
authors J.J.Kim, G.Huang, T.K.Kwon, P.Zwart, J.Headd, C.Kim
compound source
Molecule: Prkg1 Protein
Chain: A, B, C, D
Fragment: Cyclic Nucleotie Binding Domain
Ec: 2.7.11.12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqtev
symmetry Space Group: P 43
R_factor 0.180 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.588 62.588 199.522 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand CMP, PO4 enzyme Transferase E.C.2.7.11.12 BRENDA
Primary referenceCo-Crystal Structures of PKG Ibeta (92-227) with cGMP and cAMP Reveal the Molecular Details of Cyclic-Nucleotide Binding., Kim JJ, Casteel DE, Huang G, Kwon TH, Ren RK, Zwart P, Headd JJ, Brown NG, Chow DC, Palzkill T, Kim C, PLoS One. 2011 Apr 19;6(4):e18413. PMID:21526164
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (3ogj.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (3ogj.pdb2.gz) 87 Kb
  • Biological Unit Coordinates (3ogj.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (3ogj.pdb4.gz) 45 Kb
  • Biological Unit Coordinates (3ogj.pdb5.gz) 44 Kb
  • Biological Unit Coordinates (3ogj.pdb6.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3OGJ
  • CSU: Contacts of Structural Units for 3OGJ
  • Structure Factors (264 Kb)
  • Retrieve 3OGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OGJ from S2C, [Save to disk]
  • Re-refined 3ogj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OGJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OGJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ogj] [3ogj_B] [3ogj_C] [3ogj_A] [3ogj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OGJ: [cNMP ] by SMART
    • Other resources with information on 3OGJ
  • Community annotation for 3OGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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