3OJ3 Protein Binding Hydrolase date Aug 20, 2010
title Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
authors I.Bosanac, S.G.Hymowitz
compound source
Molecule: Ubiquitin
Chain: A, B, C, D, E, F, G, H
Fragment: Ubiquitin, Unp Residues 1-76
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon + Ril
Expression_system_vector_type: Pet (Invitrogen)
Expression_system_plasmid: Pet-15b

Molecule: Tumor Necrosis Factor Alpha-Induced Protein 3
Chain: I, J, K, L, M, N, O, P
Fragment: Zinc Finger A20-Type 4, Unp Residues 592-635
Synonym: Tnf Alpha-Induced Protein 3, Otu Domain-Containing 7c, Putative Dna-Binding Protein A20, Zinc Finger Protein A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfaip3, Otud7c
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon + Ril
Expression_system_vector_type: Pet (Invitrogen)
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.830 170.030 66.239 90.00 90.10 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
O, J, N, P, K, M, I, L


Primary referenceUbiquitin Binding to A20 ZnF4 Is Required for Modulation of NF-kappaB Signaling., Bosanac I, Wertz IE, Pan B, Yu C, Kusam S, Lam C, Phu L, Phung Q, Maurer B, Arnott D, Kirkpatrick DS, Dixit VM, Hymowitz SG, Mol Cell. 2010 Nov 24;40(4):548-57. PMID:21095585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3oj3.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3oj3.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (3oj3.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (3oj3.pdb4.gz) 19 Kb
  • Biological Unit Coordinates (3oj3.pdb5.gz) 19 Kb
  • Biological Unit Coordinates (3oj3.pdb6.gz) 19 Kb
  • Biological Unit Coordinates (3oj3.pdb7.gz) 20 Kb
  • Biological Unit Coordinates (3oj3.pdb8.gz) 19 Kb
  • Biological Unit Coordinates (3oj3.pdb9.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3OJ3
  • CSU: Contacts of Structural Units for 3OJ3
  • Structure Factors (827 Kb)
  • Retrieve 3OJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OJ3 from S2C, [Save to disk]
  • Re-refined 3oj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OJ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OJ3, from MSDmotif at EBI
  • Fold representative 3oj3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oj3_H] [3oj3_D] [3oj3_G] [3oj3_E] [3oj3_M] [3oj3_K] [3oj3_B] [3oj3_J] [3oj3] [3oj3_A] [3oj3_I] [3oj3_L] [3oj3_F] [3oj3_N] [3oj3_P] [3oj3_C] [3oj3_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3OJ3: [UBQ] [ZnF_A20 ] by SMART
  • Other resources with information on 3OJ3
  • Community annotation for 3OJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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