3OKU Lyase date Aug 25, 2010
title Human Carbonic Anhydrase II In Complex With 2-Ethylestrone-3 Sulfamate
authors K.H.Sippel, B.A.Stander, A.H.Robbins, C.K.Tu, M.Agbandje-Mckenna D.N.Silverman, A.M.Joubert, R.Mckenna
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Ca-II, Carbonate Dehydratas Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.141 R_Free 0.158
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.168 41.199 71.548 90.00 104.12 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand DMS, GOL, VZ4, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3oku.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 3OKU
  • CSU: Contacts of Structural Units for 3OKU
  • Structure Factors (520 Kb)
  • Retrieve 3OKU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OKU from S2C, [Save to disk]
  • Re-refined 3oku structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OKU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OKU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OKU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oku] [3oku_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OKU: [Carb_anhydrase ] by SMART
  • Other resources with information on 3OKU
  • Community annotation for 3OKU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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