3OLL Hormone Receptor Activator date Aug 26, 2010
title Crystal Structure Of Phosphorylated Estrogen Receptor Beta L Binding Domain
authors S.Moecklinghoff, R.Rose, C.Ottmann, L.Brunsveld
compound source
Molecule: Estrogen Receptor Beta
Chain: A, B
Fragment: Ligand Binding Domain (Unp Residues 261-500)
Synonym: Er-Beta, Nuclear Receptor Subfamily 3 Group A Memb
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr2, Estrb, Nr3a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Coactivator 1
Chain: C, D
Fragment: Unp Residues 683-701
Synonym: Ncoa-1, Steroid Receptor Coactivator 1, Src-1, Rip Protein Hin-2, Renal Carcinoma Antigen Ny-Ren-52, Class E B Helix-Loop-Helix Protein 74, Bhlhe74;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31
R_factor 0.175 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.860 71.860 113.280 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand EST, PTR BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceSynthesis and crystal structure of a phosphorylated estrogen receptor ligand binding domain., Mocklinghoff S, Rose R, Carraz M, Visser A, Ottmann C, Brunsveld L, Chembiochem. 2010 Nov 2;11(16):2251-4. PMID:20922740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (3oll.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (3oll.pdb2.gz) 93 Kb
  • Biological Unit Coordinates (3oll.pdb3.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 3OLL
  • CSU: Contacts of Structural Units for 3OLL
  • Structure Factors (1478 Kb)
  • Retrieve 3OLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OLL from S2C, [Save to disk]
  • Re-refined 3oll structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OLL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OLL, from MSDmotif at EBI
  • Fold representative 3oll from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oll_B] [3oll_A] [3oll_D] [3oll] [3oll_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3OLL with the sequences similar proteins can be viewed for 3OLL's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OLL
  • Community annotation for 3OLL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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