OCA Atlas for 3OMH

3OMH

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

PTR

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, B, A, D

Primary reference

Substrate Specificity of Lymphoid-specific Tyrosine Phosphatase (Lyp) and Identification of Src Kinase-associated Protein of 55 kDa Homolog (SKAP-HOM) as a Lyp Substrate., Yu X, Chen M, Zhang S, Yu ZH, Sun JP, Wang L, Liu S, Imasaki T, Takagi Y, Zhang ZY, J Biol Chem. 2011 Sep 2;286(35):30526-34. Epub 2011 Jun 30. PMID:21719704

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]

Biological Unit Coordinates (3omh.pdb1.gz) 53 Kb

Biological Unit Coordinates (3omh.pdb2.gz) 52 Kb

Biological Unit Coordinates (3omh.pdb3.gz) 53 Kb

Biological Unit Coordinates (3omh.pdb4.gz) 53 Kb

LPC: Ligand-Protein Contacts for 3OMH

CSU: Contacts of Structural Units for 3OMH

Structure Factors (254 Kb)

Retrieve 3OMH in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3OMH from S2C, [Save to disk]

Re-refined 3omh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OMH in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3omh] [3omh_A] [3omh_B] [3omh_C] [3omh_D] [3omh_E] [3omh_F] [3omh_G] [3omh_H]

SWISS-PROT database:

Domain found in 3OMH: [PTPc ] by SMART

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