3ONC Oxidoreductase Oxidoreductase Inhibitor date Aug 28, 2010
title Bond Breakage And Relocation Of A Covalently Bound Bromine O In A Complex With Har T113a Mutant After Moderate Radiation
authors C.Koch, A.Heine, G.Klebe
compound source
Molecule: Aldose Reductase
Chain: A
Synonym: Ar, Aldehyde Reductase, Aldo-Keto Reductase Family B1;
Ec: 1.1.1.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.250 66.750 47.260 90.00 92.41 90.00
method X-Ray Diffractionresolution 1.06 Å
ligand BR, CIT, LDT, NAP BindingDB enzyme Oxidoreductase E.C.1.1.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity
  • NADP-retinol dehydrogenase a...


  • Primary referenceRadiation damage reveals promising interaction position., Koch C, Heine A, Klebe G, J Synchrotron Radiat. 2011 Sep;18(Pt 5):782-9. Epub 2011 Jul 27. PMID:21862860
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (3onc.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 3ONC
  • CSU: Contacts of Structural Units for 3ONC
  • Structure Factors (1191 Kb)
  • Retrieve 3ONC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ONC from S2C, [Save to disk]
  • Re-refined 3onc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ONC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ONC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ONC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3onc] [3onc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ONC
  • Community annotation for 3ONC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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