3ONQ Structural Genomics, Unknown Function date Aug 30, 2010
title Crystal Structure Of Regulator Of Polyketide Synthase Expres Bad_0249 From Bifidobacterium Adolescentis
authors Y.Kim, R.Wu, K.Tan, J.Morales, J.Bearden, A.Joachimiak, Midwest Ce Structural Genomics (Mcsg)
compound source
Molecule: Regulator Of Polyketide Synthase Expression
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Bifidobacterium Adolescentis
Organism_taxid: 367928
Strain: Atcc 15703
Gene: Bad_0249
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.452 93.452 166.687 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, MSE, SO4 enzyme
Gene BAD
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk]
  • Biological Unit Coordinates (3onq.pdb1.gz) 341 Kb
  • Biological Unit Coordinates (3onq.pdb2.gz) 175 Kb
  • Biological Unit Coordinates (3onq.pdb3.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 3ONQ
  • CSU: Contacts of Structural Units for 3ONQ
  • Structure Factors (964 Kb)
  • Retrieve 3ONQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ONQ from S2C, [Save to disk]
  • Re-refined 3onq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ONQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ONQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ONQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3onq_B] [3onq_A] [3onq_C] [3onq_D] [3onq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ONQ
  • Community annotation for 3ONQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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