3OOI Transferase date Aug 31, 2010
title Crystal Structure Of Human Histone-Lysine N-Methyltransferas Domain In Complex With S-Adenosyl-L-Methionine
authors Q.Qiao, M.Wang, R.M.Xu
compound source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-36 Lysine-20 Specific;
Chain: A
Fragment: Set Domain
Synonym: Nuclear Receptor-Binding Set Domain-Containing Pro H3-K36-Hmtase, H4-K20-Hmtase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsd1, Ara267, Kmt3b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.186
length a length b length c angle alpha angle beta angle gamma
65.875 67.751 69.086 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand SAM, SO4, ZN enzyme Transferase E.C. BRENDA

Primary referenceThe Structure of NSD1 Reveals an Autoregulatory Mechanism Underlying Histone H3K36 Methylation., Qiao Q, Li Y, Chen Z, Wang M, Reinberg D, Xu RM, J Biol Chem. 2011 Mar 11;286(10):8361-8. Epub 2010 Dec 31. PMID:21196496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3ooi.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3OOI
  • CSU: Contacts of Structural Units for 3OOI
  • Structure Factors (452 Kb)
  • Retrieve 3OOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OOI from S2C, [Save to disk]
  • Re-refined 3ooi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OOI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OOI, from MSDmotif at EBI
  • Fold representative 3ooi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ooi_A] [3ooi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3OOI: [AWS] [EGF_like] [PostSET] [SET ] by SMART
  • Other resources with information on 3OOI
  • Community annotation for 3OOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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