3OOI Transferase date Aug 31, 2010
title Crystal Structure Of Human Histone-Lysine N-Methyltransferas Domain In Complex With S-Adenosyl-L-Methionine
authors Q.Qiao, M.Wang, R.M.Xu
compound source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-36 Lysine-20 Specific;
Chain: A
Fragment: Set Domain
Synonym: Nuclear Receptor-Binding Set Domain-Containing Pro H3-K36-Hmtase, H4-K20-Hmtase;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsd1, Ara267, Kmt3b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.875 67.751 69.086 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand SAM, SO4, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of NSD1 Reveals an Autoregulatory Mechanism Underlying Histone H3K36 Methylation., Qiao Q, Li Y, Chen Z, Wang M, Reinberg D, Xu RM, J Biol Chem. 2011 Mar 11;286(10):8361-8. Epub 2010 Dec 31. PMID:21196496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3ooi.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3OOI
  • CSU: Contacts of Structural Units for 3OOI
  • Structure Factors (452 Kb)
  • Retrieve 3OOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OOI from S2C, [Save to disk]
  • Re-refined 3ooi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OOI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OOI, from MSDmotif at EBI
  • Fold representative 3ooi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ooi_A] [3ooi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3OOI: [AWS] [EGF_like] [PostSET] [SET ] by SMART
  • Other resources with information on 3OOI
  • Community annotation for 3OOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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