3OOT Hydrolase date Aug 31, 2010
title Crystal Structure Analysis Of Renin-Indole-Piperazin Inhibit Complexes
authors Z.Bocskei
compound source
Molecule: Renin
Chain: A, B
Fragment: Unp Residues 67-406
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Human Embryonic Kidney Cell (C
symmetry Space Group: P 21 3
R_factor 0.182 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.554 143.554 143.554 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand NAG, SSR BindingDB enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery and optimization of a new class of potent and non-chiral indole-3-carboxamide-based renin inhibitors., Scheiper B, Matter H, Steinhagen H, Stilz U, Bocskei Z, Fleury V, McCort G, Bioorg Med Chem Lett. 2010 Nov 1;20(21):6268-72. Epub 2010 Aug 21. PMID:20850300
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3oot.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (3oot.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3OOT
  • CSU: Contacts of Structural Units for 3OOT
  • Structure Factors (688 Kb)
  • Retrieve 3OOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OOT from S2C, [Save to disk]
  • Re-refined 3oot structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OOT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OOT, from MSDmotif at EBI
  • Fold representative 3oot from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oot_B] [3oot] [3oot_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OOT
  • Community annotation for 3OOT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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